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Home » Southwestern Main Dishes

Published: Jan 11, 2022 · Modified: May 5, 2025 by Sara

Low Carb Enchiladas (Keto Beef & Bean Recipe)

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The key to these low carb enchiladas with beef and beans is the easy homemade red enchilada sauce that is loaded with flavor.

low carb enchiladas with toppings

Mexican food is a favorite around our house, but the tortillas, rice, and beans always create problems for those of us who want to go low-carb. In other words, me.

(All of our Mexican inspired recipes are found here.)

This low carb enchilada recipe offers a guilt-free way to enjoy my favorite cuisine without compromising on flavor. The homemade enchilada sauce is out of this world!

Jump to:
  • Why You'll Love This Recipe
  • Ingredient Notes
  • How to Make Low Carb Enchiladas
  • Storage
  • Variations and Topping Ideas
  • Expert Tips
  • Serving Suggestions
  • More Low Carb Recipes
  • Recipe FAQs
  • 📖 Recipe
  • Southwestern Main Dishes

Why You'll Love This Recipe

These keto beef enchiladas are perfect for anyone watching their carb intake but still craving Mexican flavors. The whole family will love these bean and beef enchiladas, and they won't even realize they're eating a healthier version!

What makes these so special:

  • Homemade enchilada sauce without the added sugars or thickeners
  • Uses low-carb tortillas that taste just like the regular ones
  • Packed with protein from both beef and beans
  • Customizable with your favorite toppings
  • Ready in under an hour for a weeknight dinner
low carb enchiladas with toppings and extra sauce

Ingredient Notes

For the Low Carb Enchilada Sauce

  • Tomato sauce: Make sure to choose one with no added sugar to keep this truly low carb
  • Adobo sauce: This gives a wonderful smoky heat to your sauce
  • Spices: Chili powder, cumin, and smoked paprika create that authentic Mexican flavor

For the Beef and Bean Filling:

  • Ground beef: You can also substitute ground turkey for a leaner option
  • Black beans and refried black beans: These add fiber and protein while keeping carbs reasonable
  • Low-carb tortillas: Both Mission brand's Carb Balance tortillas and La Banderita Carb Counter work well with only 4g net carbs each
  • Monterey Jack cheese: Provides that perfect melty topping that makes enchiladas irresistible

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low carb enchiladas on a plate with toppings

How to Make Low Carb Enchiladas

  1. Prepare the flavorful sauce. Heat oil in a saucepan, sauté garlic briefly, then add tomato sauce and seasonings. Let it simmer while you prepare the filling.
  2. Cook the hearty filling. Sauté onions until translucent, add ground beef and cook until browned, then mix in beans and seasonings until everything is well combined.
  3. Assemble your enchiladas. Start with a thin layer of sauce in your casserole dish, fill each low-carb tortilla with the beef-bean mixture, roll them up, and arrange them seam-side down.
  4. Top and bake to perfection. Pour the remaining sauce over your rolled enchiladas, sprinkle generously with cheese, and bake until bubbly and golden around the edges.

Storage

These keto enchiladas store beautifully in the refrigerator for up to 3 days. Simply cover your casserole dish with foil or transfer individual portions to airtight containers.

To reheat: Place in a 350°F oven for 15-20 minutes until heated through, or microwave individual portions for 1-2 minutes.

You can also freeze these low carb enchiladas for up to 3 months. Freeze before baking for best results, then thaw overnight in the refrigerator before baking as directed.

Variations and Topping Ideas

Variations

  • Rotisserie chicken (or any other shredded chicken) makes an excellent quick substitute for ground beef
  • Try ground turkey or chicken for a leaner option
  • Make it vegetarian by doubling the beans and adding sautéed bell peppers
  • Add green chiles or jalapenos for a bit of spice in the filling.

Toppings

These bean and beef enchiladas are delicious as is, but toppings take them to the next level! Try:

  • Sour cream
  • Cotija cheese
  • Diced tomatoes
  • Sliced avocados
  • Lettuce
  • Salsa
  • Guacamole
  • Fresh cilantro
  • Sliced jalapeños
  • Green onions
  • Creamy Poblano Sauce
low carb enchiladas with toppings

Expert Tips

  • If you've got shredded Mexican-style beef already cooked in the crock pot, you can use it instead of ground beef to skip a step and make these ultra quickly.
  • For strict keto diets, reduce or eliminate the beans and add more meat and low-carb veggies instead.
  • Warm your low carb tortillas slightly before rolling to prevent cracking.
  • Let the enchiladas rest for 5 minutes after baking to make serving easier.
  • Make the sauce ahead of time for even quicker assembly on busy weeknights.

Serving Suggestions

These low carb enchiladas pair perfectly with:

  • Spicy Mexican Rice
  • Cucumber Jalapeno Margarita
  • White Cheddar Poblano Soup
  • Roasted Poblano Corn Chowder
  • Esquites (Mexican Corn Salad)

More Low Carb Recipes

You'll want to check these out, but there are lots of recipes here on B&B that just naturally fall into the low carb category.

  • Keto Squash Casserole
  • Grilled Shrimp Skewers with Dipping Sauce
  • Keto Breakfast Casserole
  • Keto Parmesant Crusted Chicken
  • Low Carb Broccoli Casserole
  • Muffaletta Salad
  • Crustless Tomato Pie
  • Easy Greek Chicken Bowls

Recipe FAQs

Can I make this recipe keto?

Yes! These low carb enchiladas can easily be made keto. Depending on how strictly you follow a keto diet, you may want to eliminate some or all of the beans. Just make up for it by adding more meat and onions or other veggies like spinach to bulk up the tortillas. Otherwise, the recipe is perfectly keto. Just make sure your tomato sauce has no sugar added!

Can I use store-bought enchilada sauce?

While convenient, canned enchilada sauce typically contains cornstarch or flour and added sugar that make it not ideal for a low carb or keto diet. Our homemade low carb enchilada sauce takes just minutes to prepare and tastes so much better!

What's the best way to warm low-carb tortillas?

For best results, warm them briefly in a dry skillet for 10-15 seconds per side or wrap them in damp paper towels and microwave for 15-20 seconds. This makes them more pliable and less likely to tear when rolling.

Can I prepare these ahead of time?

Absolutely! You can assemble the entire casserole dish up to 24 hours in advance and refrigerate, covered. Add about 5-10 minutes to the baking time if cooking straight from the refrigerator.

How do I know when my enchiladas are done?

The cheese should be completely melted and starting to brown slightly at the edges. The sauce should be bubbling around the sides of the casserole dish.

📖 Recipe

low carb enchiladas with toppings

Low Carb Enchiladas with Beef & Beans

Sara
The key to these low carb enchiladas is the homemade enchilada sauce that is loaded with flavor.
4.82 from 11 votes
Print Recipe Pin Recipe
Prep Time 10 minutes mins
Cook Time 45 minutes mins
Course Main Course
Cuisine American, Mexican
Servings 8 people
Calories 481 kcal

Ingredients
  

Enchilada Sauce

  • 1 teaspoon olive oil
  • 4 cloves garlic minced
  • 30 oz tomato sauce
  • 3 tablespoon adobo sauce from canned chipotle peppers
  • 1 tablespoon chili power
  • 1 tablespoon cumin
  • 1 teaspoon smoked paprika
  • salt and pepper to taste

Beef and Bean Mixture

  • 1 tablespoon olive oil
  • ½ yellow onion diced
  • 1 lb ground beef
  • 14 oz black beans drained
  • 14 oz refried black beans
  • 2 teaspoon cumin
  • 2 teaspoon chili powder
  • 1 teaspoon garlic powder
  • ½ teaspoon smoked paprika
  • salt to taste

Enchiladas

  • 8 low carb tortillas such as Mission Carb Balance
  • 12 oz Monterey Jack cheese
  • sour cream optional
  • sliced avocados optional
  • diced tomatoes optional

Instructions
 

Enchilada Sauce

  • In a medium saucepan, heat 1 teaspoon of oil on medium heat. When hot, add garlic and cook 1 minute.
  • Add remaining ingredients and stir to combine. Lower heat to a simmer until ready to use.

Beef and Bean Mixture

  • Preheat oven to 350.
  • In a large skillet, heat 1 tablespoon of oil on medium high heat. When hot, add diced onions and cook, stirring frequently, until translucent (about 5 minutes).
  • Add ground beef and cook until no longer pink, about 10 minutes.
  • Add remaining ingredients and stir to combine. Cook 10 minutes, stirring frequently. Remove from heat.

Enchiladas

  • Pour a little bit (about ¼ cup) of sauce in a large casserole dish and spread around the pan with a spoon.
  • Assemble each enchilada by using a slotted spoon to spoon beef and bean mixture into the tortillas. Try to use about ⅛th of the mixture in each tortilla.
  • Roll tortilla and place seam-down in the casserole dish in a row.
  • Pour enchilada sauce over the enchiladas. If you like your enchiladas less wet, you do not need to use all of the sauce.
  • Top enchiladas with cheese and put in oven for about 20 minutes, or until cheese is melted and beginning to brown on edges.
  • Top with sour cream, avocados, tomatoes, etc. if desired.

Nutrition

Serving: 2enchiladasCalories: 481kcalCarbohydrates: 27gProtein: 29gFat: 29gSaturated Fat: 13gPolyunsaturated Fat: 1gMonounsaturated Fat: 12gTrans Fat: 1gCholesterol: 78mgSodium: 2285mgPotassium: 789mgFiber: 9gSugar: 7gVitamin A: 1195IUVitamin C: 9mgCalcium: 400mgIron: 5mg
Keyword low carb
Tried this recipe?Let us know how it was!

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Reader Interactions

Comments

  1. Kathryn says

    January 11, 2022 at 11:49 am

    5 stars
    We loved this enchilada recipe and the beef and beans were a delicious combination! 🙂 Adding this again to our menu next week, thansk so much!

    Reply
    • Pam says

      January 11, 2022 at 12:07 pm

      Yay! Thanks, Kathryn.

      Reply
  2. Dannii says

    January 11, 2022 at 12:35 pm

    5 stars
    Enchiladas are one of my favourite comfort foods and this low carb version looks amazing.

    Reply
    • Pam says

      January 11, 2022 at 1:49 pm

      They're so good. You'll enjoy.

      Reply
  3. Jessica Formicola says

    January 11, 2022 at 1:02 pm

    5 stars
    I know it's Taco Tuesday, but we're making these enchiladas instead! They look so flavorful and we can't wait to try them!

    Reply
    • Pam says

      January 11, 2022 at 1:50 pm

      Hope you love them like we do. Thanks, Jessica!

      Reply
  4. Sara Welch says

    January 11, 2022 at 1:40 pm

    5 stars
    Enjoyed this for dinner last night and it did not disappoint! Easy, delicious and hearty; my whole family loved it!

    Reply
    • Pam says

      January 11, 2022 at 1:50 pm

      Thanks for letting us know Sara!

      Reply
4.82 from 11 votes (7 ratings without comment)

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